Function reference • bedtorch

Read and write Read and write BED-like data files.
`read_bed()`	Load a BED-format file
`write_bed()`	Write a `data.table` to file
Data manipulation Perform various manipulations on BED-like data.
`map_bed()`	Map over scaffold intervals
`merge_bed()`	Merge overlapping intervals
`cluster_bed()`	Cluster intervals
`slop_bed()`	Slop intervals
`intersect_bed()`	Apply `intersect` operation between two tables
`subtract_bed()`	Subtract
`exclude_bed()`	Exclude certain regions
`complement_bed()`	Generate complement
`shuffle_bed()`	Shuffle intervals
Statistics
`jaccard_bed()`	Jaccard distance
`reldist_bed()`	Relative distance distribution
Other utilities
`make_windows()`	Make windows along genome
`make_random_bed()`	Randomly place intervals of fixed width across genome
`rollsum()`	Calculate rolling sums
`rollmean()`	Calculate rolling means
`as.bedtorch_table()`	Convert a `GenomicRanges` or a `data.frame` BED to standard `data.table` BED

Reference